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spcoral - Home

Contents:

  • Installation
  • Tutorials
    • Tutorial 1, Alignment of simulated data
    • Tutorial 2, Alignment of spatial transcriptomics and translatomics of the mouse brain
    • Tutorial 3, Integration of simulated data
    • Tutorial 4, Integration and downstream of spatial transcriptomics and proteomics of COAD
    • Tutorial 5, Diagonal integration of the spatial transcriptomics and epigenomics of the mouse brain
    • Tutorial 6, Diagonal integration of the spatial transcriptomics and metabolomics of the human liver
  • API
    • Preprocessing
      • spcoral.pp.calculate_global_moran
      • spcoral.pp.preprogress_adata
      • spcoral.pp.downsampling
      • spcoral.pp.extract_spatial_region
      • spcoral.pp.clipping_patch
    • Model
      • spcoral.model.regist_model
      • spcoral.model.registration
      • spcoral.model.registration_by_downsampling
      • spcoral.model.integrate_model
      • spcoral.model.integrate_model_block
    • Plot
      • spcoral.plot.show_marker
      • spcoral.plot.show_cross_align
      • spcoral.plot.show_cross_align_3D
      • spcoral.plot.show_cross_anchor_heatmap
      • spcoral.plot.show_cross_anchor_Sankey
      • spcoral.plot.show_integrate_umap
    • Analysis
      • spcoral.analysis.cluster
      • spcoral.analysis.mapping_slides
      • spcoral.analysis.pearson
      • spcoral.analysis.bivariate_moran
      • spcoral.analysis.bivariate_local_moran
  • Release notes
  • References

Python Module Index

s
 
s
- spcoral
    spcoral.analysis
    spcoral.model
    spcoral.plot
    spcoral.pp

By Heqi Wang et al.