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Contents:
Installation
Tutorials
Tutorial 1, Alignment of simulated data
Tutorial 2, Alignment of spatial transcriptomics and translatomics of the mouse brain
Tutorial 3, Integration of simulated data
Tutorial 4, Integration and downstream of spatial transcriptomics and proteomics of COAD
Tutorial 5, Diagonal integration of the spatial transcriptomics and epigenomics of the mouse brain
Tutorial 6, Diagonal integration of the spatial transcriptomics and metabolomics of the human liver
API
Preprocessing
spcoral.pp.calculate_global_moran
spcoral.pp.preprogress_adata
spcoral.pp.downsampling
spcoral.pp.extract_spatial_region
spcoral.pp.clipping_patch
Model
spcoral.model.regist_model
spcoral.model.registration
spcoral.model.registration_by_downsampling
spcoral.model.integrate_model
spcoral.model.integrate_model_block
Plot
spcoral.plot.show_marker
spcoral.plot.show_cross_align
spcoral.plot.show_cross_align_3D
spcoral.plot.show_cross_anchor_heatmap
spcoral.plot.show_cross_anchor_Sankey
spcoral.plot.show_integrate_umap
Analysis
spcoral.analysis.cluster
spcoral.analysis.mapping_slides
spcoral.analysis.pearson
spcoral.analysis.bivariate_moran
spcoral.analysis.bivariate_local_moran
Release notes
References
.rst
.pdf
Release notes
Contents
Version 0.0.1
Release notes
#
Version 0.0.1
#
Initial version
Contents
Version 0.0.1
